Difference between revisions of "References"

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== General Principles of Synthetic Biology ==
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<span style="color:#0000FF; font-size: 200%;"><u>Please share references by adding links into this page</u></span>
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[[Image:route.png|thumb|ACS Chem. Biol., 2008, 3 (1), pp 38–50|right|300px]]
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== General Principles of Synthetic Biology ==
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[http://www.nature.com/nature/journal/v438/n7067/abs/nature04335.html Reconstruction of genetic circuits]
  
== Parts Standardization/Construction ==
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[http://www.ncbi.nlm.nih.gov/pubmed/16711359 Engineering life: building a fab for biology]
  
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[http://www.bioinfo.de/isb/2006/06/0038/ Engineering life through Synthetic Biology]
  
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[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4KPX8RY-1&_user=126524&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000010360&_version=1&_urlVersion=0&_userid=126524&md5=32f32f9adee8425380015b935a6eadf8 Systems biology as a foundation for genome-scale synthetic biology]
  
== Mathematical/Computational Methods ==
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[http://www.nature.com/nature/journal/v469/n7329/full/469171a.html Synthetic biology: Division of logic labour] Cellular compartmentalization is an effective way to build gene circuits capable of complex logic operations, in which binary inputs are converted into binary outputs according to user-defined rules.
  
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== Parts Standardization/Construction ==
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[http://openwetware.org/images/9/99/Nbt1413.pdf Refinement and standardization of synthetic biological parts and devices]
  
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[http://www.jbioleng.org/content/2/1/5 Engineering BioBrick vectors from BioBrick parts]
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== Mathematical/Computational Methods ==
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[http://www.weizmann.ac.il/mcb/UriAlon/Papers/Shinar_Alon_Feinberg_SIAM_2009.pdf Sensitivity and robustness in chemical reaction networks]
  
 
== New Designs/Design Principles ==
 
== New Designs/Design Principles ==
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[http://www.nature.com/nature/journal/v403/n6767/full/403335a0.html A synthetic oscillatory network of transcriptional regulators]
  
 
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[http://www.nature.com/msb/journal/v4/n1/full/msb200843.html The incoherent feed-forward loop can generate non-monotonic input functions for genes]
  
 
== In-vivo/vitro Chassis ==
 
== In-vivo/vitro Chassis ==
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[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WN5-4GS4TTH-C&_user=126524&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000010360&_version=1&_urlVersion=0&_userid=126524&md5=05e4ed6bd00339746d790a93c7a96ef2 Protein synthesis by pure translation systems]
  
 
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[http://www.pnas.org/content/100/22/12672 Principles of cell-free genetic circuit assembly]
  
 
== Applications ==
 
== Applications ==
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[http://www.nature.com/msb/journal/v4/n1/full/msb200824.html A synthetic Escherichia coli predator–prey ecosystem]
  
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[http://www.nature.com/nature/journal/v434/n7037/full/nature03461.html A synthetic multicellular system for programmed pattern formation]
  
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== Software Packages/Tools ==
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[http://www.mathworks.co.uk/access/helpdesk/help/toolbox/simbio/index.html?/access/helpdesk/help/toolbox/simbio/ MATLAB SimBiology]
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== Measurement Methods ==
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[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B7CV2-4P3DWNX-S&_user=126524&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000010360&_version=1&_urlVersion=0&_userid=126524&md5=179a5617e3cd099a11a4ec40f9b85780 Single-cell analysis of gene expression by fluorescence microscopy]
  
 
== Ethical, Legal, and Social Issues (ELSI) ==
 
== Ethical, Legal, and Social Issues (ELSI) ==
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[http://www.nature.com/nature/journal/v468/n7326/pdf/468889a.pdf Build life to understand it] Biologists and engineers should work together: synthetic biology reveals how organisms develop and function, argue Michael Elowitz and Wendell A. Lim.
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[http://www.synbiosafe.eu/uploads///pdf/Diffusion_of_synthetic_biology.pdf Diffusion of synthetic biology: a challenge to biosafety. Systems and Synthic Biology]
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[http://www.sciencemag.org/cgi/content/summary/286/5447/2087 Ethical Considerations in Synthesizing a Minimal Genome]

Latest revision as of 11:43, 13 January 2011

Please share references by adding links into this page


ACS Chem. Biol., 2008, 3 (1), pp 38–50

General Principles of Synthetic Biology

Reconstruction of genetic circuits

Engineering life: building a fab for biology

Engineering life through Synthetic Biology

Systems biology as a foundation for genome-scale synthetic biology

Synthetic biology: Division of logic labour Cellular compartmentalization is an effective way to build gene circuits capable of complex logic operations, in which binary inputs are converted into binary outputs according to user-defined rules.

Parts Standardization/Construction

Refinement and standardization of synthetic biological parts and devices

Engineering BioBrick vectors from BioBrick parts

Mathematical/Computational Methods

Sensitivity and robustness in chemical reaction networks

New Designs/Design Principles

A synthetic oscillatory network of transcriptional regulators

The incoherent feed-forward loop can generate non-monotonic input functions for genes

In-vivo/vitro Chassis

Protein synthesis by pure translation systems

Principles of cell-free genetic circuit assembly

Applications

A synthetic Escherichia coli predator–prey ecosystem

A synthetic multicellular system for programmed pattern formation

Software Packages/Tools

MATLAB SimBiology

Measurement Methods

Single-cell analysis of gene expression by fluorescence microscopy

Ethical, Legal, and Social Issues (ELSI)

Build life to understand it Biologists and engineers should work together: synthetic biology reveals how organisms develop and function, argue Michael Elowitz and Wendell A. Lim.

Diffusion of synthetic biology: a challenge to biosafety. Systems and Synthic Biology

Ethical Considerations in Synthesizing a Minimal Genome