Difference between revisions of "References"

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== General Principles of Synthetic Biology ==
 
== General Principles of Synthetic Biology ==
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[http://www.nature.com/nature/journal/v438/n7067/abs/nature04335.html Reconstruction of genetic circuits]
  
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[http://www.ncbi.nlm.nih.gov/pubmed/16711359 Engineering life: building a fab for biology]
  
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[http://www.bioinfo.de/isb/2006/06/0038/ Engineering life through Synthetic Biology]
 +
 +
[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4KPX8RY-1&_user=126524&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000010360&_version=1&_urlVersion=0&_userid=126524&md5=32f32f9adee8425380015b935a6eadf8 Systems biology as a foundation for genome-scale synthetic biology]
  
 
== Parts Standardization/Construction ==
 
== Parts Standardization/Construction ==
 +
[http://openwetware.org/images/9/99/Nbt1413.pdf Refinement and standardization of synthetic biological parts and devices]
  
 
+
[http://www.jbioleng.org/content/2/1/5 Engineering BioBrick vectors from BioBrick parts]
  
 
== Mathematical/Computational Methods ==
 
== Mathematical/Computational Methods ==
 
+
[http://www.weizmann.ac.il/mcb/UriAlon/Papers/Shinar_Alon_Feinberg_SIAM_2009.pdf Sensitivity and robustness in chemical reaction networks]
 
+
  
 
== New Designs/Design Principles ==
 
== New Designs/Design Principles ==
 +
[http://www.nature.com/nature/journal/v403/n6767/full/403335a0.html A synthetic oscillatory network of transcriptional regulators]
  
 
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[http://www.nature.com/msb/journal/v4/n1/full/msb200843.html The incoherent feed-forward loop can generate non-monotonic input functions for genes]
  
 
== In-vivo/vitro Chassis ==
 
== In-vivo/vitro Chassis ==
 +
[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WN5-4GS4TTH-C&_user=126524&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000010360&_version=1&_urlVersion=0&_userid=126524&md5=05e4ed6bd00339746d790a93c7a96ef2 Protein synthesis by pure translation systems]
  
 
+
[http://www.pnas.org/content/100/22/12672 Principles of cell-free genetic circuit assembly]
  
 
== Applications ==
 
== Applications ==
 +
[http://www.nature.com/msb/journal/v4/n1/full/msb200824.html A synthetic Escherichia coli predator–prey ecosystem]
  
 +
== Software Packages/Tools ==
 +
[http://www.mathworks.co.uk/access/helpdesk/help/toolbox/simbio/index.html?/access/helpdesk/help/toolbox/simbio/ MATLAB SimBiology]
  
 +
== Measurement Methods ==
 +
[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B7CV2-4P3DWNX-S&_user=126524&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000010360&_version=1&_urlVersion=0&_userid=126524&md5=179a5617e3cd099a11a4ec40f9b85780 Single-cell analysis of gene expression by fluorescence microscopy]
  
 
== Ethical, Legal, and Social Issues (ELSI) ==
 
== Ethical, Legal, and Social Issues (ELSI) ==
 +
[http://www.synbiosafe.eu/uploads///pdf/Diffusion_of_synthetic_biology.pdf Diffusion of synthetic biology: a challenge to biosafety. Systems and Synthic Biology]
 +
 +
[http://www.sciencemag.org/cgi/content/summary/286/5447/2087 Ethical Considerations in Synthesizing a Minimal Genome]

Revision as of 12:47, 19 May 2009

General Principles of Synthetic Biology

Reconstruction of genetic circuits

Engineering life: building a fab for biology

Engineering life through Synthetic Biology

Systems biology as a foundation for genome-scale synthetic biology

Parts Standardization/Construction

Refinement and standardization of synthetic biological parts and devices

Engineering BioBrick vectors from BioBrick parts

Mathematical/Computational Methods

Sensitivity and robustness in chemical reaction networks

New Designs/Design Principles

A synthetic oscillatory network of transcriptional regulators

The incoherent feed-forward loop can generate non-monotonic input functions for genes

In-vivo/vitro Chassis

Protein synthesis by pure translation systems

Principles of cell-free genetic circuit assembly

Applications

A synthetic Escherichia coli predator–prey ecosystem

Software Packages/Tools

MATLAB SimBiology

Measurement Methods

Single-cell analysis of gene expression by fluorescence microscopy

Ethical, Legal, and Social Issues (ELSI)

Diffusion of synthetic biology: a challenge to biosafety. Systems and Synthic Biology

Ethical Considerations in Synthesizing a Minimal Genome