Yo-Cheng (Mark) Chang - Revision history

MarkChang: Replacing page with '[http://my2.tmu.edu.tw/markchang]http://my2.tmu.edu.tw/markchang
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2013-01-26T01:08:33Z

Replacing page with '[http://my2.tmu.edu.tw/markchang]http://my2.tmu.edu.tw/markchang '

MarkChang at 05:19, 6 September 2009

2009-09-06T05:19:36Z

MarkChang at 05:18, 6 September 2009

2009-09-06T05:18:26Z

MarkChang at 05:17, 6 September 2009

2009-09-06T05:17:55Z

MarkChang at 05:14, 6 September 2009

2009-09-06T05:14:50Z

MarkChang at 12:33, 5 June 2009

2009-06-05T12:33:06Z

MarkChang at 07:40, 5 June 2009

2009-06-05T07:40:02Z

MarkChang at 23:48, 4 June 2009

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MarkChang at 23:27, 4 June 2009

2009-06-04T23:27:09Z

MarkChang: New page: [[Image:MarkChang.jpg|thumb|Contact Email: [mailto:markycchang@gmail.com markycchang@gmail.com]|right|200px]]
D.Phil. candidate
[http://www.lsi.ox.ac.uk/ Life Sciences Interface...

2009-06-04T23:17:29Z

New page: thumb|Contact Email: [mailto:markycchang@gmail.com markycchang@gmail.com]|right|200px D.Phil. candidate [http://www.lsi.ox.ac.uk/ Life Sciences Interface...

New page
[[Image:MarkChang.jpg|thumb|Contact Email: [mailto:markycchang@gmail.com markycchang@gmail.com]|right|200px]]
 
D.Phil. candidate [http://www.lsi.ox.ac.uk/ Life Sciences Interface Doctoral Training Centre], University of Oxford. 
Supervisors: 
[http://www2.bioch.ox.ac.uk/~armitagelab/ Prof. Judith P. Armitage], Department of Biochemistry, University of Oxford. 
[http://sysos.eng.ox.ac.uk/control/sysos/index.php/User:Antonis Dr. Antonis Papachristodoulou], Department of Engineering Sciences, University of Oxford. 
College supervisor: 
[http://www.stats.ox.ac.uk/people/academic_staff/jotun_hein Prof. Juton Hein], Department of Statistics, University of Oxford. 

== Education ==
*2005.10-present: Doctoral student, Life Sciences Interface Doctoral Training Centre, University of Oxford, UK.
*1997.9-1999.6: M.S. in Biomedical Engineering, National Yang Ming University, Taiwan.
*1993.9-1997.6: B.S. in Biomedical Engineering, Chung-Yuan Christian University, Taiwan.

== Work Experience ==
*2005.3-2005.9: Project Manager, The Taiwan Biobank Project, Institute for Information Industry, Taiwan.
*2000.7-2005.1: Associate Researcher, Biomedical Engineering Center, Industrial Technology Research Institute, Taiwan.
**Department of Nanobiotechnology (2003.1-2005.1)
**Department of Genomics (2000.7-2003.1)
*1999.9-2000.6: Research Assistant, Department of Biomedical Engineering, National Yang Ming University, Taiwan.

== Teaching Experience ==
*2005.2-2005.7: Adjunct Lecturer (Course: Computational biology), Department of Biotechnology, Ming Chuan University, Taiwan.
*2004.9-2005.1: Adjunct Lecturer (Course: Bioinformatics), Graduate Institute of Life Sciences, Tamkang University, Taiwan.
*2003.3-2003.6: Instructor (Course: Special topics in bioinformatics), Graduate Program of Bioinformatics, National Yang Ming University, Taiwan.
*2002.12: Instructor (Course: Microarray data analysis), Tze-Chiang Foundation of Science & Technology, Taiwan.

== Projects ==
*2007-present: Design and construction of synthetic biological components with robust performance and stability based on the bacterial two-component system, LSI DTC, Oxford.
*2007-2008: A systematic, algorithmic methodology for model reduction of large-scale biochemical networks, Department of Engineering Science, Oxford.
*2006: In-vitro transcription and translation in lipid-bilayer vesicles, LSI DTC, Oxford.
*2006: Photosynthetic-driven ATP synthesis by bacteriorhodopsin and F1Fo ATP synthase co-reconstituted in large unilamellar vesicles, LSI DTC, Oxford.
*2004-2005: Simulation of the conjugation between mouse IgG antibody and nanoparticle, ITRI, Taiwan.
*2003-2004: Conservation profiling of functionally coupled gene clusters through multiple genome comparison, NYMU, Taiwan.
*2003: Whole genome annotation and analysis of Klebsiella pneumoniae, NYMU, Taiwan.
*2003: Whole genome annotation and analysis of Mycoplasma fermentans M64, NYMU, Taiwan.
*2002-2003: Integrated protein-protein interaction and microarray database, ITRI, Taiwan.
*2002: Large-scale analysis of bacterial repeat sequences, NYMU&ITRI, Taiwan.
*2002: Automated protein classification system based on machine learning methods, ITRI, Taiwan.
*2001-2002: Whole genome annotation and analysis of Vibrio vulnificus YJ016, NYMU&ITRI, Taiwan.
*2001-2002: Automated and object-oriented bacteria genome annotation system, ITRI, Taiwan.
*2000-2001: Automated microarray probe design system, ITRI, Taiwan.

== Publications ==
*Journal:
# Yo-Cheng Chang and Antonis Papachristodoulou. "A systematic, algorithmic methodology for model reduction of large-scale biochemical networks." (in preparation)
# Chung-Yung Chen, Keh-Ming Wu, Yo-Cheng Chang, Chuan-Hsiung Chang, Hui-Chi Tsai, Tsai-Lien Liao, Yen-Ming Liu, Hsiang-Ju Chen, Arthur Bo-Ting Shen, Jian-Chiuan Li, Teh-Li Su, Chung-Ping Shao, Chung-Te Lee, Lien-I Hor, and Shih-Feng Tsai. "Comparative genome analysis of an invasive marine pathogen, Vibrio vulnificus." Genome Research 13(12):2577-87, Dec. 2003.

*Conference:
# Yo-Cheng Chang, George H. Wadhams, Judith P. Armitage, and Antonis Papachristodoulou. "RoSBNet: From Robust Synthetic Biological Parts to Whole Systems: Theoretical, Practical and Ethical Challenges." The 4th International Meeting on Synthetic Biology (Synthetic Biology 4.0), Oct. 2008, Hong Kong, China.
# Yo-Cheng Chang, Antonis Papachristodoulou, George H. Wadhams, and Judith P. Armitage. "A new design concept for synthetic biological components with desired and robust performance based on bacterial two-component system." ESF-EMBO Symposium on Bacterial Networks 2008 (BacNet'08), Sep. 2008, Sant Feliu de Guixols, Spain.
# Yo-Cheng Chang and Antonis Papachristodoulou. "A systematic, algorithmic methodology for reducing biochemical network models" The 9th International Conference on Systems Biology (ICSB 2008), Aug. 2008, Gothenburg, Sweden.
# Yo-Cheng Chang, Simon Ross, Mark Wallace, Richard Berry, and Anthony Watts, "Photosynthetic-driven ATP synthesis by bacteriorhodopsin and F1Fo ATP synthase co-reconstituted in large unilamellar vesicles." EPSRC Life Sciences Interface DTC Conference, July 2006, Oxford, UK.
# Yo-Cheng Chang and Yuh-Jiuan Lin. "Simulation of the conjugation between mouse IgG antibody and nanoparticle." 2nd ITRI Conference of Computational Nanobiotechnology, Dec. 2004, Hsin-Chu, Taiwan.
# Hon-Wei Chen, Yo-Cheng Chang, Der-Ming Liou, and Chuan-Hsiung Chang. "Conservation profiling of functionally-coupled gene clusters through multiple genome comparison." 12th International Conference on Intelligent Systems for Molecular Biology (ISMB/ECCB), Jul.-Aug. 2004, Glasgow, UK.
# Chung-Yung Chen, Keh-Min Wu, Yo-Cheng Chang, Chuan-Hsiung Chang, Wnsi S Hu, and Shih-Feng Tsai. "The complete genome analysis of human respiratory pathogen Mycoplasma fermentans." 2nd NHRI Conference on Bacterial Gene Regulation and Pathegenesis, Apr. 2004, Tao-Yuan, Taiwan.
# Chao-Chih Pan, Ju-hwa Lin, Jeng-Dau Wu, Yao-Sung Chang, Chun-Ju Chang, Meng-Chorng Tyan, Charng-Yih Leu, Yo-Cheng Chang, Jie-Len Huang, and Chuan-Hsiung Chang. "FeverChipTM for fever-causing pathogen detection and identification." IBC's 8th Annual Biochip Technology Conference, Oct.-Nov. 2001, San Diego, USA.

== Book/Article Translations ==
*Traditional Chinese translation of the MIT Open CourseWare, OOPS, 2005.
**Layer 1 translation of "18.417 Introduction to Computational Molecular Biology".
*The Traditional Chinese version of "Developing Bioinformatics Computer Skills", O'Reilly, 2002.
**Chapter 7, "Sequence Analysis, Pairwise Alignment, and Database Searching".
**Chapter 8, "Multiple Sequence Alignments, Trees, and Profiles".

== Invited Talks ==
*2004.9: "Modeling genetic networks of a living cell.", Department of Mathematics, Tamkang University, Taiwan.
*2004.4: "Principles, applications, and recent research topics of bioinformatics.", Graduate Institute of Life Sciences, Tamkang University, Taiwan.

----

← Older revision		Revision as of 01:08, 26 January 2013
Line 1:		Line 1:
−	~~[[Image:MarkChang.jpg\|thumb\|Contact Email: [mailto:markycchang@gmail.com markycchang@gmail.com]\|right\|150px]]~~	+	[http://my2.tmu.edu.tw/markchang]http://my2.tmu.edu.tw/markchang<br>
−	~~<B><I>D.Phil. student<br>~~[http://~~www~~.~~lsi~~.ox.~~ac.uk~~/ ~~Life Sciences Interface Doctoral Training Centre~~]~~, University of Oxford.</I></B><br><br>~~
−	~~Supervisors:<br>~~
−	[http://~~www2~~.~~bioch~~.ox.~~ac.uk~~/~~~armitagelab/ Prof. Judith P. Armitage], Oxford Centre for Integrative Systems Biology, Department of Biochemistry, University of Oxford.~~<br>
−	~~[http://sysos.eng.ox.ac.uk/control/sysos/index.php/User:Antonis Dr. Antonis Papachristodoulou], Control Group, Department of Engineering Science, University of Oxford.<br><br>~~
−	~~College supervisor:<br>~~
−	~~[http://www.stats.ox.ac.uk/people/academic_staff/jotun_hein Prof. Juton Hein], Genome Analysis and Bioinformatics Group, Department of Statistics, University of Oxford.<br>~~
−
−
−	~~== Education ==~~
−	*2005.10-present: D.Phil. student, Life Sciences Interface Doctoral Training Centre, University of Oxford, UK.
−	*1997.9-1999.6: M.S. in Biomedical Engineering, National Yang Ming University, Taiwan.
−	*1993.9-1997.6: B.S. in Biomedical Engineering, Chung-Yuan Christian University, Taiwan.
−
−	~~== Work Experience ==~~
−	*2005.3-2005.9: Project Manager, The Taiwan Biobank Project, Institute for Information Industry, Taiwan.
−	*2000.7-2005.1: Associate Researcher, Biomedical Engineering Center, Industrial Technology Research Institute, Taiwan.
−	**Department of Nanobiotechnology (2003.1-2005.1)
−	**Department of Genomics (2000.7-2003.1)
−	*1999.9-2000.6: Research Assistant, Department of Biomedical Engineering, National Yang Ming University, Taiwan.
−
−	~~== Teaching Experience ==~~
−	*2005.2-2005.7: Adjunct Lecturer (Course: Computational biology), Department of Biotechnology, Ming Chuan University, Taiwan.
−	*2004.9-2005.1: Adjunct Lecturer (Course: Bioinformatics), Graduate Institute of Life Sciences, Tamkang University, Taiwan.
−	*2003.3-2003.6: Instructor (Course: Special topics in bioinformatics), Graduate Program of Bioinformatics, National Yang Ming University, Taiwan.
−	*2002.12: Instructor (Course: Microarray data analysis), Tze-Chiang Foundation of Science & Technology, Taiwan.
−
−	~~== Projects ==~~
−	*2007-present: Design and construction of synthetic biological components with robust performance and stability based on the bacterial two-component system, LSI DTC, Oxford.
−	*2007-2008: A systematic, algorithmic methodology for model reduction of large-scale biochemical networks, Department of Engineering Science, Oxford.
−	*2006: In-vitro transcription and translation in lipid-bilayer vesicles, LSI DTC, Oxford.
−	*2006: Photosynthetic-driven ATP synthesis by bacteriorhodopsin and F1Fo ATP synthase co-reconstituted in large unilamellar vesicles, LSI DTC, Oxford.
−	*2004-2005: Simulation of the conjugation between mouse IgG antibody and nanoparticle, ITRI, Taiwan.
−	*2003-2004: Conservation profiling of functionally coupled gene clusters through multiple genome comparison, NYMU, Taiwan.
−	*2003: Whole genome annotation and analysis of <I>Klebsiella pneumoniae</I>, NYMU, Taiwan.
−	*2003: Whole genome annotation and analysis of <I>Mycoplasma fermentans</I> M64, NYMU, Taiwan.
−	*2002-2003: Integrated protein-protein interaction and microarray database, ITRI, Taiwan.
−	*2002: Large-scale analysis of bacterial repeat sequences, NYMU&ITRI, Taiwan.
−	*2002: Automated protein classification system based on machine learning methods, ITRI, Taiwan.
−	*2001-2002: Whole genome annotation and analysis of <I>Vibrio vulnificus</I> YJ016, NYMU&ITRI, Taiwan.
−	*2001-2002: Automated and object-oriented bacteria genome annotation system, ITRI, Taiwan.
−	*2000-2001: Automated microarray probe design system, ITRI, Taiwan.
−
−	~~== Publications ==~~
−	*Journal:
−	~~# <u>Yo-Cheng Chang</u> and Antonis Papachristodoulou. "A systematic, algorithmic methodology for model reduction of large-scale biochemical networks." (in preparation)~~
−	# Chung-Yung Chen, Keh-Ming Wu, <u>Yo-Cheng Chang</u>, Chuan-Hsiung Chang, Hui-Chi Tsai, Tsai-Lien Liao, Yen-Ming Liu, Hsiang-Ju Chen, Arthur Bo-Ting Shen, Jian-Chiuan Li, Teh-Li Su, Chung-Ping Shao, Chung-Te Lee, Lien-I Hor, and Shih-Feng Tsai. "Comparative genome analysis of an invasive marine pathogen, <I>Vibrio vulnificus</I>." <I>Genome Research</I> 13(12):2577-87, Dec. 2003.
−
−	*Conference:
−	# <u>Yo-Cheng Chang</u>, George H. Wadhams, Judith P. Armitage, and Antonis Papachristodoulou. "RoSBNet: From Robust Synthetic Biological Parts to Whole Systems: Theoretical, Practical and Ethical Challenges." The 4th International Meeting on Synthetic Biology (Synthetic Biology 4.0), Oct. 2008, Hong Kong, China.
−	# <u>Yo-Cheng Chang</u>, Antonis Papachristodoulou, George H. Wadhams, and Judith P. Armitage. "A new design concept for synthetic biological components with desired and robust performance based on bacterial two-component system." ESF-EMBO Symposium on Bacterial Networks 2008 (BacNet'08), Sep. 2008, Sant Feliu de Guixols, Spain.
−	# <u>Yo-Cheng Chang</u> and Antonis Papachristodoulou. "A systematic, algorithmic methodology for reducing biochemical network models" The 9th International Conference on Systems Biology (ICSB 2008), Aug. 2008, Gothenburg, Sweden.
−	# <u>Yo-Cheng Chang</u>, Simon Ross, Mark Wallace, Richard Berry, and Anthony Watts, "Photosynthetic-driven ATP synthesis by bacteriorhodopsin and F1Fo ATP synthase co-reconstituted in large unilamellar vesicles." EPSRC Life Sciences Interface DTC Conference, July 2006, Oxford, UK.
−	# <u>Yo-Cheng Chang</u> and Yuh-Jiuan Lin. "Simulation of the conjugation between mouse IgG antibody and nanoparticle." 2nd ITRI Conference of Computational Nanobiotechnology, Dec. 2004, Hsin-Chu, Taiwan.
−	# Hon-Wei Chen, <u>Yo-Cheng Chang</u>, Der-Ming Liou, and Chuan-Hsiung Chang. "Conservation profiling of functionally-coupled gene clusters through multiple genome comparison." 12th International Conference on Intelligent Systems for Molecular Biology (ISMB/ECCB), Jul.-Aug. 2004, Glasgow, UK.
−	# Chung-Yung Chen, Keh-Min Wu, <u>Yo-Cheng Chang</u>, Chuan-Hsiung Chang, Wnsi S Hu, and Shih-Feng Tsai. "The complete genome analysis of human respiratory pathogen <I>Mycoplasma fermentans</I>." 2nd NHRI Conference on Bacterial Gene Regulation and Pathegenesis, Apr. 2004, Tao-Yuan, Taiwan.
−	# Chao-Chih Pan, Ju-hwa Lin, Jeng-Dau Wu, Yao-Sung Chang, Chun-Ju Chang, Meng-Chorng Tyan, Charng-Yih Leu, <u>Yo-Cheng Chang</u>, Jie-Len Huang, and Chuan-Hsiung Chang. "FeverChip<sup>TM</sup> for fever-causing pathogen detection and identification." IBC's 8th Annual Biochip Technology Conference, Oct.-Nov. 2001, San Diego, USA.
−
−	~~== Book/Article Translations ==~~
−	*Traditional Chinese translation of the MIT Open CourseWare, OOPS, 2005.
−	**Layer 1 translation of "18.417 Introduction to Computational Molecular Biology".
−	*The Traditional Chinese version of "Developing Bioinformatics Computer Skills", O'Reilly, 2002.
−	**Chapter 7, "Sequence Analysis, Pairwise Alignment, and Database Searching".
−	**Chapter 8, "Multiple Sequence Alignments, Trees, and Profiles".
−
−	~~== Invited Talks ==~~
−	*2004.9: "Modeling genetic networks of a living cell.", Department of Mathematics, Tamkang University, Taiwan.
−	*2004.4: "Principles, applications, and recent research topics of bioinformatics.", Graduate Institute of Life Sciences, Tamkang University, Taiwan.
−
−
−	~~----~~

@@ Line 1: / Line 1: @@
 [[Image:MarkChang.jpg|thumb|Contact Email: [mailto:markycchang@gmail.com markycchang@gmail.com]|right|150px]]
-<B><I>D.Phil. candidate<br>[http://www.lsi.ox.ac.uk/ Life Sciences Interface Doctoral Training Centre], University of Oxford.</I></B><br><br>
+<B><I>D.Phil. student<br>[http://www.lsi.ox.ac.uk/ Life Sciences Interface Doctoral Training Centre], University of Oxford.</I></B><br><br>
 Supervisors:<br>
 [http://www2.bioch.ox.ac.uk/~armitagelab/ Prof. Judith P. Armitage], Oxford Centre for Integrative Systems Biology, Department of Biochemistry, University of Oxford.<br>

@@ Line 2: / Line 2: @@
 <B><I>D.Phil. candidate<br>[http://www.lsi.ox.ac.uk/ Life Sciences Interface Doctoral Training Centre], University of Oxford.</I></B><br><br>
 Supervisors:<br>
-[http://www2.bioch.ox.ac.uk/~armitagelab/ Prof. Judith P. Armitage], Department of Biochemistry, University of Oxford.<br>
+[http://www2.bioch.ox.ac.uk/~armitagelab/ Prof. Judith P. Armitage], Oxford Centre for Integrative Systems Biology, Department of Biochemistry, University of Oxford.<br>
-[http://sysos.eng.ox.ac.uk/control/sysos/index.php/User:Antonis Dr. Antonis Papachristodoulou], Department of Engineering Science, University of Oxford.<br><br>
+[http://sysos.eng.ox.ac.uk/control/sysos/index.php/User:Antonis Dr. Antonis Papachristodoulou], Control Group, Department of Engineering Science, University of Oxford.<br><br>
 College supervisor:<br>
-[http://www.stats.ox.ac.uk/people/academic_staff/jotun_hein Prof. Juton Hein], Department of Statistics, University of Oxford.<br>
+[http://www.stats.ox.ac.uk/people/academic_staff/jotun_hein Prof. Juton Hein], Genome Analysis and Bioinformatics Group, Department of Statistics, University of Oxford.<br>

@@ Line 1: / Line 1: @@
-[[Image:MarkChang.jpg|thumb|Contact Email: [mailto:markycchang@gmail.com markycchang@gmail.com]|right|200px]]
+[[Image:MarkChang.jpg|thumb|Contact Email: [mailto:markycchang@gmail.com markycchang@gmail.com]|right|150px]]
 <B><I>D.Phil. candidate<br>[http://www.lsi.ox.ac.uk/ Life Sciences Interface Doctoral Training Centre], University of Oxford.</I></B><br><br>
 Supervisors:<br>

@@ Line 3: / Line 3: @@
 Supervisors:<br>
 [http://www2.bioch.ox.ac.uk/~armitagelab/ Prof. Judith P. Armitage], Department of Biochemistry, University of Oxford.<br>
-[http://sysos.eng.ox.ac.uk/control/sysos/index.php/User:Antonis Dr. Antonis Papachristodoulou], Department of Engineering Sciences, University of Oxford.<br><br>
+[http://sysos.eng.ox.ac.uk/control/sysos/index.php/User:Antonis Dr. Antonis Papachristodoulou], Department of Engineering Science, University of Oxford.<br><br>
 College supervisor:<br>
 [http://www.stats.ox.ac.uk/people/academic_staff/jotun_hein Prof. Juton Hein], Department of Statistics, University of Oxford.<br>

@@ Line 9: / Line 9: @@
 == Education ==
-*2005.10-present: D.Phil student, Life Sciences Interface Doctoral Training Centre, University of Oxford, UK.
+*2005.10-present: D.Phil. student, Life Sciences Interface Doctoral Training Centre, University of Oxford, UK.
 *1997.9-1999.6: M.S. in Biomedical Engineering, National Yang Ming University, Taiwan.
 *1993.9-1997.6: B.S. in Biomedical Engineering, Chung-Yuan Christian University, Taiwan.